Help | Release note
Header
CRAVAT v1.0
November 13, 2012
August 30, 2012

 
Check for input example.
Enter variants below:help
  • Comment lines start with ">", "#", or "!".
  • Data fields are separated by a tab or a space.
  • The following two formats can be used for input data,
    but all the data rows should be in the same format:
    • Variant ID, chromosome, start (0-based), stop (1-based),
      strand, reference base, alternate base,
      and (optional) sample ID
      1 chr22 25115448 25115449 + A G 1
    • Variant ID, transcript identifier, amino-acid substitution,
      and (optional) sample ID
      1 NP_001135977 R641W 1
For more information, click here.

or upload a variant file:help
  • Comment lines start with ">", "#", or "!".
  • Data fields are separated by a tab or a space.
  • The following two formats can be used for input data,
    but all the data rows should be in the same format:
    • Variant ID, chromosome, start (0-based), stop (1-based),
      strand, reference base, alternate base,
      and (optional) sample ID
      1 chr22 25115448 25115449 + A G 1
    • Variant ID, transcript identifier, amino-acid substitution,
      and (optional) sample ID
      1 NP_001135977 R641W 1
For more information, click here.


hg18 help
If genomic-coordinates are used for variants,
they are assumed to be in hg19.
To use hg18 instead, check this box.
red squareChoose analysis typehelp
  • Cancer driver analysis predicts whether
    the submitted variants are cancer drivers.
  • Functional effect analysis predicts whether
    the submitted variants will have any
    functional effect on their translated proteins.
  • Annotation only provides
    GeneCard and PubMed information on
    the genes containing the submitted variants.
For more information, click here.

  Cancer driver analysis
  Functional effect analysis
  Annotation only
Send the analysis reporthelp to:
An excel file where analysis results
are organized into tabs.
Include text reportshelp
Additional tab-delimited text files for
easy programmatic processing
will also be included.

Include MuPIT Interactive input file